An old colleague just sent me an email bringing up a discussion we had last year, where he was a strong proponent for the homogeneous model of a multiprocessor. The root of that discussion was the difference between the Xbox 360 and Playstation 3 processors. The Xbox 360 has a three-core, two-threads-per-core homogeneous PowerPC main processor called the Xenon (plus a graphics processor, obviously), while the PS3 has a Cell processor with a single two-threaded PowerPC core and seven SPEs, Synergistic Processing Elements (basically DSP-like SIMD machines).
In the game business, it is clear that the Xenon CPU is considered easier to code for. This means that even though the Cell processor clearly has higher theoretical raw performance, in practical the two machines are about equal in power since it is harder to make use of the Cell. Which seems to be a fact.
So here, homogeneous systems do appear to have it easier among programmers. However, I do not believe that that extends to all systems, all the time, everywhere.